Regarding the apparent "inhumanity"  of the Cosmos; how much "empty space" is "too much" empty space? After  all, God is infinite so no amount of emptiness will seem to be of the  slightest account to God. It only seems like a lot to us, because we are  miniscule - but what does that matter? If we were making a Cosmos we  might be more inclined to make it efficient and pretty in an obvious  way: but that is because we would have finite resources and a finite  perspective. Judging God's work by our standards in this way is simply  silly.
The problem of pain and suffering and disasters and  catastrophes and disorder (which is all the same thing seen from  different perspectives) is a bigger problem, because it seems to  indicate that God has created a world that is based on "injustice";  where things cannot get on with "minding their own business" but  regularly come into conflict with each other.
Every time two  electrons bounce off each other they experience what one could describe  as "conflict". Their free motions are disrupted. Their natural  progression is frustrated. They suffer defeat in their objective of  travelling in a straight line at constant speed... but this is a silly  way to describe things.
Electrons simply do what they do and when  they bounce off each other there is no "catastrophe" in any ethical  sense. Similarly, when a star goes super-nova or when galaxies collide:  this is simply what matter does, and such events can have "positive"  outcomes (such as the production of the heavy elements of which planets  are later formed) as well as "negative" ones.
I suspect that the  Cosmos simply has to have the characteristics that it has (or at least  ones close to these) if it is "to serve God's purpose". This may be the  same as "to produce life" or may be a wider matter than this - how can  you or I possibly know, or even begin to guess. While I believe that God  is just and loving I do not know what the issues at stake are. 
You  and I are like soldiers on the front line. We may have good reason to  trust the integrity and honour and judgement of the General who is in  command of us and if so we will trust that the orders he gives and the  strategy that he employs are for the best even when from our point of  view they seem to be incomprehensible or even misguided. 
In such  a situation one has a simple choice: to be courageous and keep faith in  one's General or to act upon what seems to be the case according to  one's own limited experience and knowledge. The horrible fact is that  one might be wrong about one's belief in the General. Perhaps he is  misguided or incompetent or ignorant of what is actually going on.  Perhaps it would be better to question the orders that have been  received...
There is no easy answer to this dilemma. In the end  one has to decide that God is real and good (there are excellent  arguments to indicate that these statements are true) and that all the  evidence to the contrary must be set aside and put down to one not  knowing the full story; or one has to decide that either God is not  realm or else doesn't care about the Cosmos - in which case one has a  fundamental problem with valuing anything, for it would seem that life  is futile and devoid of any possible worth.
I rather suspect  (both as a physicist and a Catholic) that the Cosmos is finite, though I  don't fundamentally care whether this is actually true or not - with  either of my hats on. Actually, to be honest, as a physicist I hope it  is finite; the maths would be so much simpler and various strange things  would be avoided (such as the existence of infinitely many copies of  myself al typing the same message...)
The existence of an  infinite Cosmos is in just as much need of an explanation as a finite  one. The epistemological deficit (the need for explanation) is not about  temporal or spatial inadequacy, but about the local contingency of each  and every thing, event and process. Adding up an infinite amount of  contingency doesn't get rid of it - it just makes it infinite :-) If the  Cosmos is contingent, why was and will it ever be at all? Only of God  can it be truly said: "as it was in the beginning, is now and ever shall  be; unto ages of ages."
It is one option to believe that God =  The Cosmos. This is called "Pantheism". I think that this is a coherent  position; but I don't like it myself as I can't believe that the Whole  could have a property which none of its parts even begins to demonstrate  - namely "necessity of being". However, this is a matter of faith on my  part - though there may be an argument against Pantheism that I am not  presently aware of.
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